The Resource Protein homology detection through alignment of Markov random fields : using MRFalign, Jinbo Xu, Sheng Wang, Jianzhu Ma

Protein homology detection through alignment of Markov random fields : using MRFalign, Jinbo Xu, Sheng Wang, Jianzhu Ma

Label
Protein homology detection through alignment of Markov random fields : using MRFalign
Title
Protein homology detection through alignment of Markov random fields
Title remainder
using MRFalign
Statement of responsibility
Jinbo Xu, Sheng Wang, Jianzhu Ma
Creator
Contributor
Author
Subject
Genre
Language
eng
Summary
This work covers sequence-based protein homology detection, a fundamental and challenging bioinformatics problem with a variety of real-world applications. The text first surveys a few popular homology detection methods, such as Position-Specific Scoring Matrix (PSSM) and Hidden Markov Model (HMM) based methods, and then describes a novel Markov Random Fields (MRF) based method developed by the authors. MRF-based methods are much more sensitive than HMM- and PSSM-based methods for remote homolog detection and fold recognition, as MRFs can model long-range residue-residue interaction. The text also describes the installation, usage and result interpretation of programs implementing the MRF-based method
Member of
Cataloging source
N$T
http://library.link/vocab/creatorName
Xu, Jinbo
Dewey number
519.2/3
Illustrations
illustrations
Index
no index present
LC call number
QA274.45
LC item number
.X8 2015eb
Literary form
non fiction
Nature of contents
  • dictionaries
  • bibliography
http://library.link/vocab/relatedWorkOrContributorName
  • Wang, Sheng
  • Ma, Jianzhu
Series statement
SpringerBriefs in Computer Science,
http://library.link/vocab/subjectName
  • Markov random fields
  • Sequence alignment (Bioinformatics)
  • Bioinformatics
  • MATHEMATICS
  • MATHEMATICS
  • Bioinformatics
  • Markov random fields
  • Sequence alignment (Bioinformatics)
  • Computer Science
  • Computational Biology/Bioinformatics
  • Probability and Statistics in Computer Science
  • Bioinformatics
  • Statistics for Life Sciences, Medicine, Health Sciences
  • Maths for computer scientists
  • Molecular biology
  • Probability & statistics
  • Life sciences: general issues
Label
Protein homology detection through alignment of Markov random fields : using MRFalign, Jinbo Xu, Sheng Wang, Jianzhu Ma
Link
https://ezproxy.lib.ou.edu/login?url=http://link.springer.com/10.1007/978-3-319-14914-1
Instantiates
Publication
Antecedent source
unknown
Bibliography note
Includes bibliographical references
Carrier category
online resource
Carrier category code
cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
txt
Content type MARC source
rdacontent
Contents
Introduction -- Method -- Software -- Experiments and Results -- Conclusion
Dimensions
unknown
Extent
1 online resource (viii, 51 pages)
File format
unknown
Form of item
online
Isbn
9783319149141
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
c
Note
SpringerLink
Other control number
10.1007/978-3-319-14914-1
Other physical details
illustrations (some color).
Quality assurance targets
not applicable
Reformatting quality
unknown
Sound
unknown sound
Specific material designation
remote
System control number
  • (OCoLC)900723995
  • (OCoLC)ocn900723995
Label
Protein homology detection through alignment of Markov random fields : using MRFalign, Jinbo Xu, Sheng Wang, Jianzhu Ma
Link
https://ezproxy.lib.ou.edu/login?url=http://link.springer.com/10.1007/978-3-319-14914-1
Publication
Antecedent source
unknown
Bibliography note
Includes bibliographical references
Carrier category
online resource
Carrier category code
cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
txt
Content type MARC source
rdacontent
Contents
Introduction -- Method -- Software -- Experiments and Results -- Conclusion
Dimensions
unknown
Extent
1 online resource (viii, 51 pages)
File format
unknown
Form of item
online
Isbn
9783319149141
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
c
Note
SpringerLink
Other control number
10.1007/978-3-319-14914-1
Other physical details
illustrations (some color).
Quality assurance targets
not applicable
Reformatting quality
unknown
Sound
unknown sound
Specific material designation
remote
System control number
  • (OCoLC)900723995
  • (OCoLC)ocn900723995

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