The Resource Plant omics : trends and applications, Khalid Rehman Hakeem, Hüseyin Tombuloğlu, Güzin Tombuloğlu, editors

Plant omics : trends and applications, Khalid Rehman Hakeem, Hüseyin Tombuloğlu, Güzin Tombuloğlu, editors

Label
Plant omics : trends and applications
Title
Plant omics
Title remainder
trends and applications
Statement of responsibility
Khalid Rehman Hakeem, Hüseyin Tombuloğlu, Güzin Tombuloğlu, editors
Contributor
Editor
Subject
Genre
Language
eng
Summary
To comprehend the organizational principle of cellular functions at diff erent levels, an integrative approach with large-scale experiments, the so-called?omics? data including genomics, transcriptomics, proteomics, and metabolomics, is needed. Omics aims at the collective characterization and quantifi cation of pools of biological molecules that translate into the structure, function, and dynamics of an organism or organisms. Currently, omics is an essential tool to understand the molecular systems that underlie various plant functions. Furthermore, in several plant species, the development of omics resources has progressed to address the particular biological properties of individual species. Integration of knowledge from omics-based research is an emerging issue as researchers seek to identify significance, gain biological insights and promote translational research. From these perspectives, we intend to provide the emerging aspects of plant systems research based on omics and bioinformatics analyses together with their associated resources and technological advances. Th e present book covers a wide range of omics topics, and discusses the latest trends and application area of plant sciences. In this volume, we have highlighted the working solutions as well as open problems and future challenges in plant omics studies. We believe that this book will initiate and introduce readers to state-of-the-art developments and trends in omics-driven research
Cataloging source
N$T
Dewey number
580
Illustrations
illustrations
Index
no index present
LC call number
QK45.2
Literary form
non fiction
Nature of contents
  • dictionaries
  • bibliography
http://library.link/vocab/relatedWorkOrContributorName
  • Hakeem, Khalid Rehman
  • Tombuloğlu, Hüseyin
  • Tombuloğlu, Güzin
http://library.link/vocab/subjectName
  • Plant genetics
  • Botany
  • NATURE
  • SCIENCE
  • Botany
  • Plant genetics
  • Biotechnology
  • Botany & plant sciences
  • Proteins
  • Cellular biology (cytology)
Label
Plant omics : trends and applications, Khalid Rehman Hakeem, Hüseyin Tombuloğlu, Güzin Tombuloğlu, editors
Link
https://ezproxy.lib.ou.edu/login?url=http://link.springer.com/10.1007/978-3-319-31703-8
Instantiates
Publication
Antecedent source
unknown
Bibliography note
Includes bibliographical references
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
  • Dedication; Foreword; Preface; Contents; About the Editors; Genome Analysis of€Plants; 1 Introduction; 2 The Genetic Structure of€Plant Genomes; 2.1 Genetic Maps; 2.2 Physical Maps; 3 Plant Genome Annotation; 3.1 Plant Genome Databases; 3.2 Repeat Masking; 3.3 Structural Annotation; 3.3.1 Ab Initio Methods; 3.3.2 Homology-Based Methods; 3.3.3 Integrated Methods; 3.4 Functional Annotation; 3.4.1 Domain Search; 3.4.2 Gene Ontology; 4 Molecular Phylogenetics; 5 Comparative Plant Genomics; 5.1 Orthologs and€Paralogs; 5.2 Synteny, Duplication, and€Polyploidy
  • 5.3 Web Resources for€Comparative Genomics6 Conclusion; References; Genomics Resources for€Plants; 1 Introduction; 2 1000 Plants (oneKP or 1KP); 3 Amborella Genome Database; 4 BAR; 5 Cacao Genome Database (CGD); 6 CerealsDB; 7 Gramene; 8 Kazusa Tomato Genomics Database (KaTomicsDB); 9 Parasitic Plant Genome Project (PPGP); 10 Plant Genome DataBase Japan (PGDBj); 11 Plant Genome Duplication Database (PGDD); 12 Plant Genome and€Systems Biology (PGSB); 13 Phytozome; 14 Plant Repeat Databases; 15 PLAZA; 16 Plant Expression Database (PLEXdb); References
  • QTL Analysis in€Plants: Ancient and€Modern Perspectives1 Introduction; 1.1 Quantitative Trait Loci; 1.2 Essentiality of€QTL Analysis; 1.3 Principle of€QTL Analysis; 2 Methodology Involved; 2.1 Mapping Population; 2.2 Genotyping; 2.3 Phenotyping; 2.4 Software Used; 2.4.1 QTL Cartographer; 2.4.2 MQTL; 2.4.3 MapQTL; 2.4.4 Joinmap; 2.4.5 Map Manager; 2.4.6 QGene; 2.4.7 SAS; 2.5 Interpreting Results; 2.5.1 Isolation of€Linked Markers; 2.5.2 Mapping Function; 2.5.3 Single-Marker Analysis; 2.5.4 Interval Mapping; 3 Modern Perspectives in€QTL Analysis; 3.1 Genotyping to€Genomics
  • 3.2 Phenotyping to€Phenomics3.3 Multiparent Advanced Generation Inter-Cross (MAGIC) Populations; 3.4 Next-Generation Sequencing (NGS); 4 Practical Potential of€QTL Analysis; 4.1 Crops with€Improved Breeding Strategies; 4.2 Revealing the€Genetic Bases of€Abiotic Stress Tolerance; 4.3 Exposing Genetic Dissection of€Biotic Stress Resistance; 5 Conclusions and€Future Perspective; References; Transposon Activity in€Plant Genomes; 1 Introduction; 2 Structure of€Transposons; 3 Types and€Classification of€Transposons; 3.1 Class I€Transposons (Retrotransposons); 3.1.1 Order 1: LTR Retrotransposons
  • 3.1.2 Order 2: DIRS3.1.3 Order 3: PENELOPE (PLE); 3.1.4 Order 4: LINE; 3.1.5 Order 5: SINE; 3.2 Class II Transposons (DNA Transposons); 3.2.1 Subclass I€Order I: TIR; 3.2.2 Subclass I€Order II: Crypton; 3.2.3 Subclass II Order I: Helitron; 3.2.4 Subclass II Order II: Maverick; 3.3 Transposons in€Different Plant Species; 4 Transposon Markers; 4.1 Inter-Retrotransposon Amplified Polymorphism (IRAP); 4.2 Retrotransposon-Microsatellite-Amplified Polymorphism (REMAP); 4.3 Retrotransposon-Based Insertional Polymorphism (RBIP); 4.4 Sequence-Specific Amplified Polymorphism (S-SAP)
Dimensions
unknown
Extent
1 online resource
File format
unknown
Form of item
online
Governing access note
License restrictions may limit access
Isbn
9783319317038
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Note
SpringerLink
Other physical details
color illustrations
Quality assurance targets
not applicable
Reformatting quality
unknown
Sound
unknown sound
Specific material designation
remote
System control number
  • (OCoLC)957464731
  • (OCoLC)ocn957464731
Label
Plant omics : trends and applications, Khalid Rehman Hakeem, Hüseyin Tombuloğlu, Güzin Tombuloğlu, editors
Link
https://ezproxy.lib.ou.edu/login?url=http://link.springer.com/10.1007/978-3-319-31703-8
Publication
Antecedent source
unknown
Bibliography note
Includes bibliographical references
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
  • Dedication; Foreword; Preface; Contents; About the Editors; Genome Analysis of€Plants; 1 Introduction; 2 The Genetic Structure of€Plant Genomes; 2.1 Genetic Maps; 2.2 Physical Maps; 3 Plant Genome Annotation; 3.1 Plant Genome Databases; 3.2 Repeat Masking; 3.3 Structural Annotation; 3.3.1 Ab Initio Methods; 3.3.2 Homology-Based Methods; 3.3.3 Integrated Methods; 3.4 Functional Annotation; 3.4.1 Domain Search; 3.4.2 Gene Ontology; 4 Molecular Phylogenetics; 5 Comparative Plant Genomics; 5.1 Orthologs and€Paralogs; 5.2 Synteny, Duplication, and€Polyploidy
  • 5.3 Web Resources for€Comparative Genomics6 Conclusion; References; Genomics Resources for€Plants; 1 Introduction; 2 1000 Plants (oneKP or 1KP); 3 Amborella Genome Database; 4 BAR; 5 Cacao Genome Database (CGD); 6 CerealsDB; 7 Gramene; 8 Kazusa Tomato Genomics Database (KaTomicsDB); 9 Parasitic Plant Genome Project (PPGP); 10 Plant Genome DataBase Japan (PGDBj); 11 Plant Genome Duplication Database (PGDD); 12 Plant Genome and€Systems Biology (PGSB); 13 Phytozome; 14 Plant Repeat Databases; 15 PLAZA; 16 Plant Expression Database (PLEXdb); References
  • QTL Analysis in€Plants: Ancient and€Modern Perspectives1 Introduction; 1.1 Quantitative Trait Loci; 1.2 Essentiality of€QTL Analysis; 1.3 Principle of€QTL Analysis; 2 Methodology Involved; 2.1 Mapping Population; 2.2 Genotyping; 2.3 Phenotyping; 2.4 Software Used; 2.4.1 QTL Cartographer; 2.4.2 MQTL; 2.4.3 MapQTL; 2.4.4 Joinmap; 2.4.5 Map Manager; 2.4.6 QGene; 2.4.7 SAS; 2.5 Interpreting Results; 2.5.1 Isolation of€Linked Markers; 2.5.2 Mapping Function; 2.5.3 Single-Marker Analysis; 2.5.4 Interval Mapping; 3 Modern Perspectives in€QTL Analysis; 3.1 Genotyping to€Genomics
  • 3.2 Phenotyping to€Phenomics3.3 Multiparent Advanced Generation Inter-Cross (MAGIC) Populations; 3.4 Next-Generation Sequencing (NGS); 4 Practical Potential of€QTL Analysis; 4.1 Crops with€Improved Breeding Strategies; 4.2 Revealing the€Genetic Bases of€Abiotic Stress Tolerance; 4.3 Exposing Genetic Dissection of€Biotic Stress Resistance; 5 Conclusions and€Future Perspective; References; Transposon Activity in€Plant Genomes; 1 Introduction; 2 Structure of€Transposons; 3 Types and€Classification of€Transposons; 3.1 Class I€Transposons (Retrotransposons); 3.1.1 Order 1: LTR Retrotransposons
  • 3.1.2 Order 2: DIRS3.1.3 Order 3: PENELOPE (PLE); 3.1.4 Order 4: LINE; 3.1.5 Order 5: SINE; 3.2 Class II Transposons (DNA Transposons); 3.2.1 Subclass I€Order I: TIR; 3.2.2 Subclass I€Order II: Crypton; 3.2.3 Subclass II Order I: Helitron; 3.2.4 Subclass II Order II: Maverick; 3.3 Transposons in€Different Plant Species; 4 Transposon Markers; 4.1 Inter-Retrotransposon Amplified Polymorphism (IRAP); 4.2 Retrotransposon-Microsatellite-Amplified Polymorphism (REMAP); 4.3 Retrotransposon-Based Insertional Polymorphism (RBIP); 4.4 Sequence-Specific Amplified Polymorphism (S-SAP)
Dimensions
unknown
Extent
1 online resource
File format
unknown
Form of item
online
Governing access note
License restrictions may limit access
Isbn
9783319317038
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Note
SpringerLink
Other physical details
color illustrations
Quality assurance targets
not applicable
Reformatting quality
unknown
Sound
unknown sound
Specific material designation
remote
System control number
  • (OCoLC)957464731
  • (OCoLC)ocn957464731

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