The Resource Field guidelines for genetic experimental designs in high-throughput sequencing, Ana M. Aransay, José Luis Lavín Trueba, editors

Field guidelines for genetic experimental designs in high-throughput sequencing, Ana M. Aransay, José Luis Lavín Trueba, editors

Label
Field guidelines for genetic experimental designs in high-throughput sequencing
Title
Field guidelines for genetic experimental designs in high-throughput sequencing
Statement of responsibility
Ana M. Aransay, José Luis Lavín Trueba, editors
Contributor
Editor
Subject
Genre
Language
eng
Summary
High throughput sequencing (HTS) technologies have conquered the genomics and epigenomics worlds. The applications of HTS methods are wide, and can be used to sequence everything from whole or partial genomes, transcriptomes, non-coding RNAs, ribosome profiling, to single-cell sequencing. Having such diversity of alternatives, there is a demand for information by research scientists without experience in HTS that need to choose the most suitable methodology or combination of platforms and to define their experimental designs to achieve their specific objectives. Field Guidelines for Genetic Experimental Designs in High-Throughput Sequencing aims to collect in a single volume all aspects that should be taken into account when HTS technologies are being incorporated into a research project and the reasons behind them. Moreover, examples of several successful strategies will be analyzed to make the point of the crucial features. This book will be of use to all scientist that are unfamiliar with HTS and want to incorporate such technologies to their research
Cataloging source
N$T
Dewey number
572.8/633
Illustrations
illustrations
Index
index present
LC call number
QP625.N89
Literary form
non fiction
Nature of contents
  • dictionaries
  • bibliography
NLM call number
QU 58
http://library.link/vocab/relatedWorkOrContributorName
  • Aransay, Ana M.
  • Lavín Trueba, José Luis
http://library.link/vocab/subjectName
  • Nucleotide sequence
  • Combinatorial chemistry
  • SCIENCE / Life Sciences / Biochemistry
  • Combinatorial chemistry
  • Nucleotide sequence
  • High-Throughput Nucleotide Sequencing
  • Life sciences: general issues
  • Medical genetics
Label
Field guidelines for genetic experimental designs in high-throughput sequencing, Ana M. Aransay, José Luis Lavín Trueba, editors
Link
https://ezproxy.lib.ou.edu/login?url=http://link.springer.com/10.1007/978-3-319-31350-4
Instantiates
Publication
Antecedent source
unknown
Bibliography note
Includes bibliographical references at the end of each chapter and index
Carrier category
online resource
Carrier category code
cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
txt
Content type MARC source
rdacontent
Contents
The High Throughput Sequencing technologies triple-W discussion: Why to use HTS, What is the optimal HTS method to use, Which data analysis workflow to follow -- Whole genome sequencing recommendations -- Counseling for targeted DNA region re-sequencing -- Transcriptome profiling strategies -- Differential mRNA Alternative Splicing -- microRNA discovery and expression analysis in animals -- Analysis of Long Non-coding RNAs in RNA-seq data -- Ribosome profiling -- Genome-wide analysis of DNA methylation patterns by high-throughput sequencing -- Characterization of DNA-protein interactions: Design and analysis of ChIP-seq experiments -- PAR-CLIP: A genomic technique to dissect RNA-protein interactions -- Metagenomic design and sequencing -- A hitchhiker's guide to Metatranscriptomics -- Eukaryotic Single-Cell mRNA Sequencing -- Eukaryotic Single-Cell DNA Sequencing -- Submitting data to a public repository, the final step of a successful HTS experiment
Dimensions
unknown
Extent
1 online resource (xi, 399 pages)
File format
unknown
Form of item
online
Isbn
9783319313504
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
c
Note
SpringerLink
Other control number
10.1007/978-3-319-31350-4
Other physical details
illustrations (some color)
Quality assurance targets
not applicable
Reformatting quality
unknown
Sound
unknown sound
Specific material designation
remote
System control number
  • (OCoLC)951217543
  • (OCoLC)ocn951217543
Label
Field guidelines for genetic experimental designs in high-throughput sequencing, Ana M. Aransay, José Luis Lavín Trueba, editors
Link
https://ezproxy.lib.ou.edu/login?url=http://link.springer.com/10.1007/978-3-319-31350-4
Publication
Antecedent source
unknown
Bibliography note
Includes bibliographical references at the end of each chapter and index
Carrier category
online resource
Carrier category code
cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
txt
Content type MARC source
rdacontent
Contents
The High Throughput Sequencing technologies triple-W discussion: Why to use HTS, What is the optimal HTS method to use, Which data analysis workflow to follow -- Whole genome sequencing recommendations -- Counseling for targeted DNA region re-sequencing -- Transcriptome profiling strategies -- Differential mRNA Alternative Splicing -- microRNA discovery and expression analysis in animals -- Analysis of Long Non-coding RNAs in RNA-seq data -- Ribosome profiling -- Genome-wide analysis of DNA methylation patterns by high-throughput sequencing -- Characterization of DNA-protein interactions: Design and analysis of ChIP-seq experiments -- PAR-CLIP: A genomic technique to dissect RNA-protein interactions -- Metagenomic design and sequencing -- A hitchhiker's guide to Metatranscriptomics -- Eukaryotic Single-Cell mRNA Sequencing -- Eukaryotic Single-Cell DNA Sequencing -- Submitting data to a public repository, the final step of a successful HTS experiment
Dimensions
unknown
Extent
1 online resource (xi, 399 pages)
File format
unknown
Form of item
online
Isbn
9783319313504
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
c
Note
SpringerLink
Other control number
10.1007/978-3-319-31350-4
Other physical details
illustrations (some color)
Quality assurance targets
not applicable
Reformatting quality
unknown
Sound
unknown sound
Specific material designation
remote
System control number
  • (OCoLC)951217543
  • (OCoLC)ocn951217543

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