The Resource Comparative gene finding : models, algorithms and implementation, Marina Axelson-Fisk

Comparative gene finding : models, algorithms and implementation, Marina Axelson-Fisk

Label
Comparative gene finding : models, algorithms and implementation
Title
Comparative gene finding
Title remainder
models, algorithms and implementation
Statement of responsibility
Marina Axelson-Fisk
Creator
Author
Subject
Genre
Language
eng
Summary
This unique text/reference presents a concise guide to building computational gene finders, and describes the state of the art in computational gene finding methods, with a particular focus on comparative approaches. Fully updated and expanded, this new edition examines next-generation sequencing (NGS) technology, including annotation pipelines for NGS data. The book also discusses conditional random fields, enhancing the broad coverage of topics spanning probability theory, statistics, information theory, optimization theory, and numerical analysis. Topics and features: Introduces the fundamental terms and concepts in the field, and provides an historical overview of algorithm development Discusses algorithms for single-species gene finding, and approaches to pairwise and multiple sequence alignments, then describes how the strengths in both areas can be combined to improve the accuracy of gene finding Explores the gene features most commonly captured by a computational gene model, and explains the basics of parameter training Illustrates how to implement a comparative gene finder, reviewing the different steps and accuracy assessment measures used to debug and benchmark the software Examines NGS techniques, and how to build a genome annotation pipeline, discussing sequence assembly, de novo repeat masking, and gene prediction (NEW) Postgraduate students, and researchers wishing to enter the field quickly, will find this accessible text a valuable source of insights and examples. A suggested course outline for instructors is provided in the preface. Dr. Marina Axelson-Fisk is an Associate Professor at the Department of Mathematical Sciences of Chalmers University of Technology, Gothenburg, Sweden
Member of
Cataloging source
N$T
http://library.link/vocab/creatorName
Axelson-Fisk, Marina
Dewey number
572.860285
Illustrations
illustrations
Index
index present
Language note
English
LC call number
QH447
LC item number
.A93 2015eb
Literary form
non fiction
Nature of contents
  • dictionaries
  • bibliography
NLM call number
  • 2015 F-905
  • QU 26.5
Series statement
Computational biology
Series volume
volume 20
http://library.link/vocab/subjectName
  • Genomics
  • SCIENCE
  • Genomics
  • Computer Science
  • Computational Biology/Bioinformatics
  • Bioinformatics
  • Computational Biology
  • Molecular biology
  • Life sciences: general issues
Label
Comparative gene finding : models, algorithms and implementation, Marina Axelson-Fisk
Link
https://ezproxy.lib.ou.edu/login?url=http://link.springer.com/10.1007/978-1-4471-6693-1
Instantiates
Publication
Antecedent source
unknown
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
txt
Content type MARC source
rdacontent
Contents
Introduction -- Single Species Gene Finding -- Sequence Alignment -- Comparative Gene Finding -- Gene Structure Submodels -- Parameter Training -- Implementation of a Comparative Gene Finder -- Annotation Pipelines for Next Generation Sequencing Projects
Dimensions
unknown
Edition
Second edition.
Extent
1 online resource
File format
unknown
Form of item
online
Isbn
9781447166924
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
c
Note
SpringerLink
Other control number
10.1007/978-1-4471-6693-1
Other physical details
illustrations.
Quality assurance targets
not applicable
Reformatting quality
unknown
Sound
unknown sound
Specific material designation
remote
System control number
  • (OCoLC)907641034
  • (OCoLC)ocn907641034
Label
Comparative gene finding : models, algorithms and implementation, Marina Axelson-Fisk
Link
https://ezproxy.lib.ou.edu/login?url=http://link.springer.com/10.1007/978-1-4471-6693-1
Publication
Antecedent source
unknown
Bibliography note
Includes bibliographical references and index
Carrier category
online resource
Carrier category code
cr
Carrier MARC source
rdacarrier
Color
multicolored
Content category
text
Content type code
txt
Content type MARC source
rdacontent
Contents
Introduction -- Single Species Gene Finding -- Sequence Alignment -- Comparative Gene Finding -- Gene Structure Submodels -- Parameter Training -- Implementation of a Comparative Gene Finder -- Annotation Pipelines for Next Generation Sequencing Projects
Dimensions
unknown
Edition
Second edition.
Extent
1 online resource
File format
unknown
Form of item
online
Isbn
9781447166924
Level of compression
unknown
Media category
computer
Media MARC source
rdamedia
Media type code
c
Note
SpringerLink
Other control number
10.1007/978-1-4471-6693-1
Other physical details
illustrations.
Quality assurance targets
not applicable
Reformatting quality
unknown
Sound
unknown sound
Specific material designation
remote
System control number
  • (OCoLC)907641034
  • (OCoLC)ocn907641034

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