The Resource Bioconductor Case Studies, by Florian Hahne, Wolfgang Huber, Robert Gentleman, Seth Falcon, (electronic resource)

Bioconductor Case Studies, by Florian Hahne, Wolfgang Huber, Robert Gentleman, Seth Falcon, (electronic resource)

Label
Bioconductor Case Studies
Title
Bioconductor Case Studies
Statement of responsibility
by Florian Hahne, Wolfgang Huber, Robert Gentleman, Seth Falcon
Creator
Contributor
Author
Author
Subject
Language
  • eng
  • eng
Summary
Bioconductor software has become a standard tool for the analysis and comprehension of data from high-throughput genomics experiments. Its application spans a broad field of technologies used in contemporary molecular biology. In this volume, the authors present a collection of cases to apply Bioconductor tools in the analysis of microarray gene expression data. Topics covered include * import and preprocessing of data from various sources * statistical modeling of differential gene expression * biological metadata * application of graphs and graph rendering * machine learning for clustering and classification problems * gene set enrichment analysis Each chapter of this book describes an analysis of real data using hands-on example driven approaches. Short exercises help in the learning process and invite more advanced considerations of key topics. The book is a dynamic document. All the code shown can be executed on a local computer, and readers are able to reproduce every computation, figure, and table. The authors of this book have longtime experience in teaching introductory and advanced courses to the application of Bioconductor software. Florian Hahne is a Postdoc at the Fred Hutchinson Cancer Research Center in Seattle, developing novel methodologies for the analysis of high-throughput cell-biological data. Wolfgang Huber is a research group leader in the European Molecular Biology Laboratory at the European Bioinformatics Institute in Cambridge. He has wide-ranging experience in the development of methods for the analysis of functional genomics experiments. Robert Gentleman is Head of the Program in Computational Biology at the Fred Hutchinson Cancer Research Center in Seattle, and he is one of the two authors of the original R system. Seth Falcon is a member of the R core team and former project manager and developer for the Bioconductor project
Member of
http://library.link/vocab/creatorName
Hahne, Florian
Dewey number
572.80285
http://bibfra.me/vocab/relation/httpidlocgovvocabularyrelatorsaut
  • giTV2NXhwtM
  • DoBjPHuyq7E
  • YDnv8cmqyr0
  • z-796_ilrWE
Image bit depth
0
Language note
English
LC call number
QH301-705
Literary form
non fiction
Nature of contents
dictionaries
http://library.link/vocab/relatedWorkOrContributorName
  • Huber, Wolfgang.
  • Gentleman, Robert.
  • Falcon, Seth.
Series statement
Use R!,
http://library.link/vocab/subjectName
  • Life sciences
  • Statistics
  • Bioinformatics
  • Life Sciences, general
  • Statistics for Life Sciences, Medicine, Health Sciences
  • Computational Biology/Bioinformatics
  • Bioinformatics
  • Mathematical and Computational Biology
Label
Bioconductor Case Studies, by Florian Hahne, Wolfgang Huber, Robert Gentleman, Seth Falcon, (electronic resource)
Instantiates
Publication
Note
Description based upon print version of record
Antecedent source
mixed
Bibliography note
Includes bibliographical references (p. [271]-275) and index
Carrier category
online resource
Carrier category code
cr
Color
not applicable
Content category
text
Content type code
txt
Contents
The ALL Dataset -- R and Bioconductor Introduction -- Processing Affymetrix Expression Data -- Two Color Arrays -- Fold Changes, Log Ratios, Background Correction, Shrinkage Estimation, and Variance Stabilization -- Easy Differential Expression -- Differential Expression -- Annotation and Metadata -- Supervised Machine Learning -- Unsupervised Machine Learning -- Using Graphs for Interactome Data -- Graph Layout -- Gene Set Enrichment Analysis -- Hypergeometric Testing Used for Gene Set Enrichment Analysis -- Solutions to Exercises
Dimensions
unknown
Edition
1.
Extent
1 online resource (287 p.)
File format
multiple file formats
Form of item
online
Isbn
9786613250940
Level of compression
uncompressed
Media category
computer
Media type code
c
Other control number
10.1007/978-0-387-77240-0
Quality assurance targets
absent
Reformatting quality
access
Specific material designation
remote
System control number
  • (CKB)2670000000031765
  • (EBL)763130
  • (OCoLC)649423526
  • (SSID)ssj0000449083
  • (PQKBManifestationID)11280716
  • (PQKBTitleCode)TC0000449083
  • (PQKBWorkID)10392044
  • (PQKB)11530227
  • (DE-He213)978-0-387-77240-0
  • (MiAaPQ)EBC763130
  • (EXLCZ)992670000000031765
Label
Bioconductor Case Studies, by Florian Hahne, Wolfgang Huber, Robert Gentleman, Seth Falcon, (electronic resource)
Publication
Note
Description based upon print version of record
Antecedent source
mixed
Bibliography note
Includes bibliographical references (p. [271]-275) and index
Carrier category
online resource
Carrier category code
cr
Color
not applicable
Content category
text
Content type code
txt
Contents
The ALL Dataset -- R and Bioconductor Introduction -- Processing Affymetrix Expression Data -- Two Color Arrays -- Fold Changes, Log Ratios, Background Correction, Shrinkage Estimation, and Variance Stabilization -- Easy Differential Expression -- Differential Expression -- Annotation and Metadata -- Supervised Machine Learning -- Unsupervised Machine Learning -- Using Graphs for Interactome Data -- Graph Layout -- Gene Set Enrichment Analysis -- Hypergeometric Testing Used for Gene Set Enrichment Analysis -- Solutions to Exercises
Dimensions
unknown
Edition
1.
Extent
1 online resource (287 p.)
File format
multiple file formats
Form of item
online
Isbn
9786613250940
Level of compression
uncompressed
Media category
computer
Media type code
c
Other control number
10.1007/978-0-387-77240-0
Quality assurance targets
absent
Reformatting quality
access
Specific material designation
remote
System control number
  • (CKB)2670000000031765
  • (EBL)763130
  • (OCoLC)649423526
  • (SSID)ssj0000449083
  • (PQKBManifestationID)11280716
  • (PQKBTitleCode)TC0000449083
  • (PQKBWorkID)10392044
  • (PQKB)11530227
  • (DE-He213)978-0-387-77240-0
  • (MiAaPQ)EBC763130
  • (EXLCZ)992670000000031765

Library Locations

  • Architecture LibraryBorrow it
    Gould Hall 830 Van Vleet Oval Rm. 105, Norman, OK, 73019, US
    35.205706 -97.445050
  • Bizzell Memorial LibraryBorrow it
    401 W. Brooks St., Norman, OK, 73019, US
    35.207487 -97.447906
  • Boorstin CollectionBorrow it
    401 W. Brooks St., Norman, OK, 73019, US
    35.207487 -97.447906
  • Chinese Literature Translation ArchiveBorrow it
    401 W. Brooks St., RM 414, Norman, OK, 73019, US
    35.207487 -97.447906
  • Engineering LibraryBorrow it
    Felgar Hall 865 Asp Avenue, Rm. 222, Norman, OK, 73019, US
    35.205706 -97.445050
  • Fine Arts LibraryBorrow it
    Catlett Music Center 500 West Boyd Street, Rm. 20, Norman, OK, 73019, US
    35.210371 -97.448244
  • Harry W. Bass Business History CollectionBorrow it
    401 W. Brooks St., Rm. 521NW, Norman, OK, 73019, US
    35.207487 -97.447906
  • History of Science CollectionsBorrow it
    401 W. Brooks St., Rm. 521NW, Norman, OK, 73019, US
    35.207487 -97.447906
  • John and Mary Nichols Rare Books and Special CollectionsBorrow it
    401 W. Brooks St., Rm. 509NW, Norman, OK, 73019, US
    35.207487 -97.447906
  • Library Service CenterBorrow it
    2601 Technology Place, Norman, OK, 73019, US
    35.185561 -97.398361
  • Price College Digital LibraryBorrow it
    Adams Hall 102 307 West Brooks St., Norman, OK, 73019, US
    35.210371 -97.448244
  • Western History CollectionsBorrow it
    Monnet Hall 630 Parrington Oval, Rm. 300, Norman, OK, 73019, US
    35.209584 -97.445414
Processing Feedback ...